WormBase Tree Display for Variation: WBVar02153934

WBVar02153934 Evidence: Curator_confirmed: WBPerson1983
  Name: Public_name: umn3
    Other_name: F13D2.1a.1:c.813+880_813+1883del
      F13D2.1b.1:c.813+880_813+1883del
    HGVSg: CHROMOSOME_X:g.11185763_11186766del
  Sequence_details: SMap: S_parent: Sequence: F13D2
    Flanking_sequences: ttgttctggtttaaagccgcaaagtcttgg agggtaccatcaagcaatggcattctggtt
    Mapping_target: F13D2
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Engineered_allele
    Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004989
    Laboratory: CGC
    Production_method: CRISPR_Cas9
    Status: Live
  Affects: Gene: WBGene00008735
      WBGene00008737
    Transcript: F13D2.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-646
        CDS_position: ?-632
        Protein_position: ?-211
        Intron_number: 2-4/8
        Exon_number: 1-5/9
      F13D2.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F13D2.1b.1:c.813+880_813+1883del
        Intron_number: 9/38
      F13D2.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F13D2.1a.1:c.813+880_813+1883del
        Intron_number: 8/37
  Remark: Batch created from Strain genotype data Curator_confirmed: WBPerson1983
    Whole gene deletions made by the Rougvie, Moerman, Hutter and Sternberg labs that replace the coding sequence with a [LoxP + myo-2p::GFP::unc-54 3Prime UTR + rps-27p::neoR::unc-54 3Prime UTR + LoxP] cassette.
    Allele Description:gnrr-7(umn3[LoxP + myo-2p::GFP::unc-54 3' UTR + rps-27p::neoR::unc-54 3' UTR + LoxP]) X.
  Method: Engineered_allele