WormBase Tree Display for Variation: WBVar02153718

WBVar02153718 Name: Public_name: gk5448
    Other_name: T12A2.1.1:c.852+3772_852+4934del
      C18F10.4.1:c.9_*18del
    HGVSg: CHROMOSOME_III:g.6257192_6258354del
  Sequence_details: SMap: S_parent: Sequence: C18F10
    Flanking_sequences: TTGCCGAAGTAAAAAAAACAGTTGACGAAA ATCGGCATTCGGTATTCAGCTTCAATTTTT
    Mapping_target: CHROMOSOME_III
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00047642
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00005159
      WBGene00020436
    Transcript: C18F10.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C18F10.4.1:c.9_*18del
        cDNA_position: 9-885
        CDS_position: 9-?
        Protein_position: 3-?
        Intron_number: 1-4/5
        Exon_number: 1-6/6
      T12A2.1.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T12A2.1.1:c.852+3772_852+4934del
        Intron_number: 7/10
  Isolation: Mutagen: CRISPR_Cas9
  Genetics: Interpolated_map_position: III -1.40744
  Remark: Batch created from Strain genotype data Curator_confirmed: WBPerson1983
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is perfect, but it was not sequenced.
  Method: Deletion_allele