WormBase Tree Display for Variation: WBVar02152541

WBVar02152541 Name: Public_name: tm12279
    Other_name: T07A5.4:n.254_394-38del
    HGVSg: CHROMOSOME_III:g.10299420_10299599del
  Sequence_details: SMap: S_parent: Sequence: T07A5
    Flanking_sequences: atgggatttttaaacaaaaaattttacaat caggcttgtactggatacagatgttcgggt
    Mapping_target: T07A5
    Source_location: 7 CHROMOSOME_III 10299419 10299600 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm12279_external
      tm12279_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 12279
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011557
      WBGene00305587
      WBGene00305588
    Transcript: T07A5.10
      T07A5.9
    Pseudogene: T07A5.4 VEP_consequence: splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T07A5.4:n.254_394-38del
        cDNA_position: 254-?
        Intron_number: 1/1
        Exon_number: 1/2
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Remark: 3456/3457-3636/3637(180 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele