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WormBase Tree Display for Variation: WBVar02152445

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Name Class

WBVar02152445NamePublic_nametm12172
Other_nameF26A3.2a.1:c.93_161del
CE46329:p.Ala32_Tyr54del
F26A3.2a.2:c.93_161del
HGVSgCHROMOSOME_I:g.7642988_7643056del
Sequence_detailsSMapS_parentSequenceF26A3
Flanking_sequencesctgacgtcaccggctcttccaaacagctcagtctcctggtctcgaacggttccctgaaat
Mapping_targetF26A3
Source_location7CHROMOSOME_I76429877643057Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm12172_external
tm12172_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq12172
NBP_allele
StatusLive
AffectsGeneWBGene00009141
TranscriptF26A3.2a.2VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScF26A3.2a.2:c.93_161del
HGVSpCE46329:p.Ala32_Tyr54del
cDNA_position180-248
CDS_position93-161
Protein_position31-54
Exon_number3/6
Codon_changeacTGCTCTACGCACATCATGTACACTTTATGTTGGAAATTTATCATATTACACTAAAGAAGACCAAGTCTAt/act
Amino_acid_changeTALRTSCTLYVGNLSYYTKEDQVY/T
F26A3.2a.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScF26A3.2a.1:c.93_161del
HGVSpCE46329:p.Ala32_Tyr54del
cDNA_position180-248
CDS_position93-161
Protein_position31-54
Exon_number3/6
Codon_changeacTGCTCTACGCACATCATGTACACTTTATGTTGGAAATTTATCATATTACACTAAAGAAGACCAAGTCTAt/act
Amino_acid_changeTALRTSCTLYVGNLSYYTKEDQVY/T
IsolationMutagenTMP/UV
GeneticsMapI
Remark5379/5380-5448/5449(69 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele