WormBase Tree Display for Variation: WBVar02152233

WBVar02152233 Name: Public_name: tm11934
    Other_name: R07A4.3.1:c.362_424+31del
      R07A4.3.2:c.362_424+31del
      R07A4.4.1:c.490-593_490-500del
    HGVSg: CHROMOSOME_X:g.10755378_10755471del
  Sequence_details: SMap: S_parent: Sequence: R07A4
    Flanking_sequences: tcagaccgatcgccgtgaatggaacggcat tcaattatcaaacataagagttgttttcgt
    Mapping_target: R07A4
    Source_location: 7 CHROMOSOME_X 10755377 10755472 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11934_external
      tm11934_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11934
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011074
      WBGene00011075
    Transcript: R07A4.3.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R07A4.3.2:c.362_424+31del
        cDNA_position: 381-?
        CDS_position: 362-?
        Protein_position: 121-?
        Intron_number: 4/7
        Exon_number: 4/8
      R07A4.4.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R07A4.4.1:c.490-593_490-500del
        Intron_number: 5/17
      R07A4.3.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R07A4.3.1:c.362_424+31del
        cDNA_position: 500-?
        CDS_position: 362-?
        Protein_position: 121-?
        Intron_number: 5/8
        Exon_number: 5/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Remark: 16729/16730-16823/16824(94 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele