WormBase Tree Display for Variation: WBVar02151988

WBVar02151988 Name: Public_name: tm11665
    Other_name: C30F12.5b.1:c.160_317-99delinsTAAAATCA
      C30F12.5a.1:c.865_1022-99delinsTAAAATCA
    HGVSg: CHROMOSOME_I:g.6992547_6992972delinsTGATTTTA
  Sequence_details: SMap: S_parent: Sequence: C30F12
    Flanking_sequences: gaaaatgtgtcaaatgggttttgatttaaa atgtggtacggttgttcctggtggtggtgg
    Mapping_target: C30F12
    Source_location: 7 CHROMOSOME_I 6992546 6992973 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TGATTTTA
      Deletion
    PCR_product: tm11665_external
      tm11665_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11665
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016264
      WBGene00198651
    Transcript: C30F12.5b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C30F12.5b.1:c.160_317-99delinsTAAAATCA
        cDNA_position: 160-?
        CDS_position: 160-?
        Protein_position: 54-?
        Intron_number: 2/2
        Exon_number: 2/3
      C30F12.5a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C30F12.5a.1:c.865_1022-99delinsTAAAATCA
        cDNA_position: 1048-?
        CDS_position: 865-?
        Protein_position: 289-?
        Intron_number: 10/11
        Exon_number: 10/12
      C30F12.9 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Remark: 35516/35517-TGATTTTA-35942/35943 (426 bp deletion + 8 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele