WormBase Tree Display for Variation: WBVar02151514

WBVar02151514 Name: Public_name: tm11169
    Other_name: T28B11.1a.2:c.-49-5301_-49-5187del
    HGVSg: CHROMOSOME_V:g.10720435_10720549del
  Sequence_details: SMap: S_parent: Sequence: T28B11
    Flanking_sequences: ctgacctcacatgcaccgttatcttttacc gactaataaaatttgtgcattctgttgaaa
    Mapping_target: T28B11
    Source_location: 7 CHROMOSOME_V 10720434 10720550 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11169_external
      tm11169_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11169
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00197769
      WBGene00012117
    Transcript: T28B11.1a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T28B11.1a.2:c.-49-5301_-49-5187del
        Intron_number: 1/6
      T28B11.12 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-11
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Remark: 16727/16728-16842/16843 (115 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele