WormBase Tree Display for Variation: WBVar02151471

WBVar02151471 Name: Public_name: tm11122
    HGVSg: CHROMOSOME_X:g.2551875_2558539del
  Sequence_details: SMap: S_parent: Sequence: F52H2
    Flanking_sequences: tcgaaacaaaatctctcaaaaaattcaaac tatttttcgaaaagtttcactaaaaactca
    Mapping_target: F52H2
    Source_location: 7 CHROMOSOME_X 2551874 2558540 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11122_external
      tm11122_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11122
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018717
      WBGene00198978
      WBGene00000004
      WBGene00198194
      WBGene00023063
      WBGene00201859
      WBGene00196510
    Transcript: F52H2.2a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-11/12
        Exon_number: 1-13/13
      F52H2.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F52H2.5.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 5/6
        Exon_number: 6-7/7
      F52H2.11 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F52H2.2b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-12/13
        Exon_number: 1-14/14
      F52H2.5.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 6/7
        Exon_number: 7-8/8
      F52H2.9 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F52H2.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F52H2.14 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Remark: 18209/18210-24874/24875 (6665 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele