WormBase Tree Display for Variation: WBVar02150761
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| WBVar02150761 | Name | Public_name | tm3272 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | T04B2.5.2:c.468_762del | |||||||
| T04B2.5.1:c.468_762del | ||||||||
| CE42657:p.Leu158HisfsTer4 | ||||||||
| HGVSg | CHROMOSOME_IV:g.10057834_10058128del | |||||||
| Sequence_details | SMap | S_parent | Sequence | T04B2 | ||||
| Flanking_sequences | tgctggagctgtgcttatgtccaatgcagg | cataccactgaagttatattaaataggaaa | ||||||
| Mapping_target | T04B2 | |||||||
| Source_location | 7 | CHROMOSOME_IV | 10057833 | 10058129 | Inferred_automatically | National_Bioresource_Project | ||
| Type_of_mutation | Deletion | |||||||
| PCR_product | tm3272_external | |||||||
| tm3272_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Laboratory | FX | |||||||
| Author | Mitani S | |||||||
| DB_info | Database | National_Bioresource_Project | seq | 3272 | ||||
| NBP_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00011423 | ||||||
| Transcript | T04B2.5.2 | VEP_consequence | frameshift_variant | |||||
| VEP_impact | HIGH | |||||||
| HGVSc | T04B2.5.2:c.468_762del | |||||||
| HGVSp | CE42657:p.Leu158HisfsTer4 | |||||||
| cDNA_position | 590-884 | |||||||
| CDS_position | 468-762 | |||||||
| Protein_position | 156-254 | |||||||
| Exon_number | 5/7 | |||||||
| Codon_change | tgCCTTCTATATGCCTCTCGAAGGCTTCTTGGTGATGAAACACTTCCGAATCTTTTTGATTGGTTTATTGGAACATCAACAGGAAGTATGCTAGCTCTCTCAATGGTCAATAAGATATCAATAAGTGAATGTTTTTTCCAATACTGGGATATGAAAAGTCAAATTTTTCTTCGTGGAAGTACTGTAAAACGACTGCTTGGAGATCAAGTAGCTGTTCAAACTAAGAATATCGATAAAGTATTGGGAGATTGCTTCCCAACTCAAACTCTCCAAGAATGCCCAACTCGTCTCACTATC/tg | |||||||
| Amino_acid_change | CLLYASRRLLGDETLPNLFDWFIGTSTGSMLALSMVNKISISECFFQYWDMKSQIFLRGSTVKRLLGDQVAVQTKNIDKVLGDCFPTQTLQECPTRLTI/X | |||||||
| T04B2.5.1 | VEP_consequence | frameshift_variant | ||||||
| VEP_impact | HIGH | |||||||
| HGVSc | T04B2.5.1:c.468_762del | |||||||
| HGVSp | CE42657:p.Leu158HisfsTer4 | |||||||
| cDNA_position | 521-815 | |||||||
| CDS_position | 468-762 | |||||||
| Protein_position | 156-254 | |||||||
| Exon_number | 4/6 | |||||||
| Codon_change | tgCCTTCTATATGCCTCTCGAAGGCTTCTTGGTGATGAAACACTTCCGAATCTTTTTGATTGGTTTATTGGAACATCAACAGGAAGTATGCTAGCTCTCTCAATGGTCAATAAGATATCAATAAGTGAATGTTTTTTCCAATACTGGGATATGAAAAGTCAAATTTTTCTTCGTGGAAGTACTGTAAAACGACTGCTTGGAGATCAAGTAGCTGTTCAAACTAAGAATATCGATAAAGTATTGGGAGATTGCTTCCCAACTCAAACTCTCCAAGAATGCCCAACTCGTCTCACTATC/tg | |||||||
| Amino_acid_change | CLLYASRRLLGDETLPNLFDWFIGTSTGSMLALSMVNKISISECFFQYWDMKSQIFLRGSTVKRLLGDQVAVQTKNIDKVLGDCFPTQTLQECPTRLTI/X | |||||||
| Isolation | Mutagen | TMP/UV | ||||||
| Genetics | Map | IV | ||||||
| Remark | 19395/19396-19690/19691 (295 bp deletion) | |||||||
| This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
| Method | NBP_knockout_allele |
