WormBase Tree Display for Variation: WBVar02150167

WBVar02150167 Name: Public_name: tm12597
    Other_name: F48E8.1b.1:c.265_282+153del
      F48E8.1a.1:c.265_282+153del
      F48E8.1c.1:c.265_282+153del
    HGVSg: CHROMOSOME_III:g.5475377_5475547del
  Sequence_details: SMap: S_parent: Sequence: F48E8
    Flanking_sequences: tatctcaaaaaatggattactcacgagcat gaagtttaaatgtatgaagttatcacgccg
    Mapping_target: F48E8
    Source_location: 7 CHROMOSOME_III 5475376 5475548 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm12597_external
      tm12597_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 12597
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003055
    Transcript: F48E8.1b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F48E8.1b.1:c.265_282+153del
        cDNA_position: 310-?
        CDS_position: 265-?
        Protein_position: 89-?
        Intron_number: 3/7
        Exon_number: 3/8
      F48E8.1c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F48E8.1c.1:c.265_282+153del
        cDNA_position: 265-?
        CDS_position: 265-?
        Protein_position: 89-?
        Intron_number: 2/5
        Exon_number: 2/6
      F48E8.1a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F48E8.1a.1:c.265_282+153del
        cDNA_position: 308-?
        CDS_position: 265-?
        Protein_position: 89-?
        Intron_number: 3/7
        Exon_number: 3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Remark: 32144/32145-32315/32316(171 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele