WormBase Tree Display for Variation: WBVar02148386

WBVar02148386 Name: Public_name: tm10652
    Other_name: CE41482:p.Pro349_Gln380del
      Y69H2.7b.1:c.1055_1150del
      Y69H2.7a.1:c.1046_1141del
      CE47828:p.Pro352_Gln383del
    HGVSg: CHROMOSOME_V:g.18695585_18695680del
  Sequence_details: SMap: S_parent: Sequence: Y69H2
    Flanking_sequences: tgaaccagcacctgctcttccaaatggctc ttgtgctcttttgccaaaaaactcaaagtt
    Mapping_target: Y69H2
    Source_location: 7 CHROMOSOME_V 18695584 18695681 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10652_external
      tm10652_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10652
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013482
    Transcript: Y69H2.7b.1 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: Y69H2.7b.1:c.1055_1150del
        HGVSp: CE47828:p.Pro352_Gln383del
        cDNA_position: 1130-1225
        CDS_position: 1055-1150
        Protein_position: 352-384
        Exon_number: 8/9
        Codon_change: cCGGATCGCCGCTTCTTCGAGCTCGCCCAGTCGACAGTTCACTACTCGGAAGCCGAGCTCCTGTCAGCCTACAACCAATACGATGAGCCCCTCCAACtt/ctt
        Amino_acid_change: PDRRFFELAQSTVHYSEAELLSAYNQYDEPLQL/L
      Y69H2.7a.1 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: Y69H2.7a.1:c.1046_1141del
        HGVSp: CE41482:p.Pro349_Gln380del
        cDNA_position: 1078-1173
        CDS_position: 1046-1141
        Protein_position: 349-381
        Exon_number: 8/9
        Codon_change: cCGGATCGCCGCTTCTTCGAGCTCGCCCAGTCGACAGTTCACTACTCGGAAGCCGAGCTCCTGTCAGCCTACAACCAATACGATGAGCCCCTCCAACtt/ctt
        Amino_acid_change: PDRRFFELAQSTVHYSEAELLSAYNQYDEPLQL/L
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 77279/77280-77375/77376 (96 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele