WormBase Tree Display for Variation: WBVar02148258

WBVar02148258 Name: Public_name: tm10509
    Other_name: F26C11.1.1:c.5_79del
      F26C11.1.2:c.5_79del
      CE01559:p.Asn2_Asn26del
    HGVSg: CHROMOSOME_II:g.9895549_9895623del
  Sequence_details: SMap: S_parent: Sequence: F26C11
    Flanking_sequences: gtaccttactttttttcaggaaaaaaatga tgaagttggaattcgtgcaaactgtaagtt
    Mapping_target: F26C11
    Source_location: 7 CHROMOSOME_II 9895548 9895624 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10509_external
      tm10509_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10509
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00009146
    Transcript: F26C11.1.1 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: F26C11.1.1:c.5_79del
        HGVSp: CE01559:p.Asn2_Asn26del
        cDNA_position: 12-86
        CDS_position: 5-79
        Protein_position: 2-27
        Exon_number: 2/10
        Codon_change: aACAAACTATTAATTTTTATCATGTTGGTTACTTTTTTGGCAATCGAGAAGAGTTTCATGTCAGAAGTAGACAACAtg/atg
        Amino_acid_change: NKLLIFIMLVTFLAIEKSFMSEVDNM/M
      F26C11.1.2 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: F26C11.1.2:c.5_79del
        HGVSp: CE01559:p.Asn2_Asn26del
        cDNA_position: 102-176
        CDS_position: 5-79
        Protein_position: 2-27
        Exon_number: 3/11
        Codon_change: aACAAACTATTAATTTTTATCATGTTGGTTACTTTTTTGGCAATCGAGAAGAGTTTCATGTCAGAAGTAGACAACAtg/atg
        Amino_acid_change: NKLLIFIMLVTFLAIEKSFMSEVDNM/M
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 1225/1226-1300/1301 (75 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele