WormBase Tree Display for Variation: WBVar02147946

WBVar02147946 Name: Public_name: tm10134
    Other_name: T04H1.9.2:c.-4_207del
      T04H1.9.1:c.-4_207del
    HGVSg: CHROMOSOME_V:g.12261800_12262066del
  Sequence_details: SMap: S_parent: Sequence: T04H1
    Flanking_sequences: aattgtgtttcaaatccctcaattgcagag cccgaatccatcaattatgtccgttctaca
    Mapping_target: T04H1
    Source_location: 7 CHROMOSOME_V 12261799 12262067 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10134_external
      tm10134_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10134
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006539
    Transcript: T04H1.9.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T04H1.9.2:c.-4_207del
        cDNA_position: 5-215
        CDS_position: ?-207
        Protein_position: ?-69
        Intron_number: 2/5
        Exon_number: 1-3/6
      T04H1.9.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T04H1.9.1:c.-4_207del
        cDNA_position: 87-297
        CDS_position: ?-207
        Protein_position: ?-69
        Intron_number: 3/6
        Exon_number: 2-4/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 27490/27491-27757/27758 (267 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele