WormBase Tree Display for Variation: WBVar02145330
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| WBVar02145330 | Evidence | Paper_evidence | WBPaper00045258 | ||
|---|---|---|---|---|---|
| Name | Public_name | oxTi48 | |||
| Other_name | Y71G12B.11e.1:c.1813-460_1813-459insTA | ||||
| Y71G12B.11b.1:c.2953_2954insTA | |||||
| Y71G12B.11c.1:c.919-460_919-459insTA | |||||
| Y71G12B.11a.1:c.2908-460_2908-459insTA | |||||
| Y71G12B.11f.1:c.1858_1859insTA | |||||
| CE27024:p.Val986Ter | |||||
| CE50422:p.Val621Ter | |||||
| HGVSg | CHROMOSOME_I:g.1732837_1732838insTA | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71G12B | |
| Flanking_sequences | tgcgtaaaatcgtgtgcgaatcatcgacta | gaagctgttcagtggtctcggtgcgcttgt | |||
| Mapping_target | Y71G12B | ||||
| Type_of_mutation | Insertion | TA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Transposon_insertion | miniMos | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00006728 | ||||
| Laboratory | EG | ||||
| Corresponding_transgene | WBTransgene00021883 | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006771 | |||
| Transcript | Y71G12B.11f.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y71G12B.11f.1:c.1858_1859insTA | ||||
| HGVSp | CE50422:p.Val621Ter | ||||
| cDNA_position | 1858-1859 | ||||
| CDS_position | 1858-1859 | ||||
| Protein_position | 620 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | cta/cTAta | ||||
| Amino_acid_change | L/LX | ||||
| Y71G12B.11c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11c.1:c.919-460_919-459insTA | ||||
| Intron_number | 3/6 | ||||
| Y71G12B.11e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11e.1:c.1813-460_1813-459insTA | ||||
| Intron_number | 3/6 | ||||
| Y71G12B.11a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11a.1:c.2908-460_2908-459insTA | ||||
| Intron_number | 7/11 | ||||
| Y71G12B.11b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y71G12B.11b.1:c.2953_2954insTA | ||||
| HGVSp | CE27024:p.Val986Ter | ||||
| cDNA_position | 2960-2961 | ||||
| CDS_position | 2953-2954 | ||||
| Protein_position | 985 | ||||
| Exon_number | 8/13 | ||||
| Codon_change | cta/cTAta | ||||
| Amino_acid_change | L/LX | ||||
| Genetics | Interpolated_map_position | I | -13.1611 | ||
| Reference | WBPaper00045258 | ||||
| Method | Transposon_insertion |
