WormBase Tree Display for Variation: WBVar02145227

WBVar02145227 Name: Public_name: tm8064
    Other_name: K04B12.1.1:c.157_206del
      CE53912:p.Val53ThrfsTer3
    HGVSg: CHROMOSOME_II:g.14424542_14424591del
  Sequence_details: SMap: S_parent: Sequence: K04B12
    Flanking_sequences: tgaaccggaccgagtgaaacctcatgttgt gtagatctgaaagattaaaattactcaggt
    Mapping_target: K04B12
    Source_location: 7 CHROMOSOME_II 14424541 14424592 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm8064_external
      tm8064_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 8064
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004048
    Transcript: K04B12.1.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: K04B12.1.1:c.157_206del
        HGVSp: CE53912:p.Val53ThrfsTer3
        cDNA_position: 167-216
        CDS_position: 157-206
        Protein_position: 53-69
        Exon_number: 3/17
        Codon_change: GTGGCATCTCTCAACCGACTAACATCTTTATCAATTTCTAATTTTTCAATa/a
        Amino_acid_change: VASLNRLTSLSISNFSI/X
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 9199/9200-9249/9250 (50 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele