WormBase Tree Display for Variation: WBVar02145049

WBVar02145049 Name: Public_name: tm7880
    HGVSg: CHROMOSOME_V:g.2022196_2026086del
  Sequence_details: SMap: S_parent: Sequence: F59A7
    Flanking_sequences: gggttcattttttaagtagaaaatataatt aggaatagaaaatttccaactaaccagcca
    Mapping_target: F59A7
    Source_location: 7 CHROMOSOME_V 2022195 2026087 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm7880_external
      tm7880_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 7880
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00019091
      WBGene00019092
      WBGene00268196
    Transcript: F59A7.5b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/6
        Exon_number: 1-7/7
      F59A7.5a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/6
        Exon_number: 1-7/7
      F59A7.14.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 3/4
        Exon_number: 4-5/5
      F59A7.5d.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-6/7
        Exon_number: 1-8/8
      F59A7.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 3-5/5
        Exon_number: 4-6/6
      F59A7.5c.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-6/7
        Exon_number: 1-8/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 23273/23274-27164/27165 (3891 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele