WormBase Tree Display for Variation: WBVar02144636

WBVar02144636 Name: Public_name: tm7489
    Other_name: Y43H11AL.1c.1:c.383_494+13del
      Y43H11AL.1a.1:c.425_536+13del
      Y43H11AL.1b.1:c.425_536+13del
      Y43H11AL.1a.4:c.425_536+13del
      Y43H11AL.1a.3:c.425_536+13del
      Y43H11AL.1a.2:c.425_536+13del
    HGVSg: CHROMOSOME_II:g.230854_230978del
  Sequence_details: SMap: S_parent: Sequence: Y43H11AL
    Flanking_sequences: cttcccaatcgaatcgtaggttgtagtttg gaatcgagctttgatattctccacggtaat
    Mapping_target: Y43H11AL
    Source_location: 7 CHROMOSOME_II 230853 230979 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm7489_external
      tm7489_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 7489
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021545
    Transcript: Y43H11AL.1a.3 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1a.3:c.425_536+13del
        cDNA_position: 427-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/10
        Exon_number: 4/11
      Y43H11AL.1c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1c.1:c.383_494+13del
        cDNA_position: 383-?
        CDS_position: 383-?
        Protein_position: 128-?
        Intron_number: 2/8
        Exon_number: 2/9
      Y43H11AL.1b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1b.1:c.425_536+13del
        cDNA_position: 446-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/11
        Exon_number: 4/12
      Y43H11AL.1a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1a.1:c.425_536+13del
        cDNA_position: 446-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/10
        Exon_number: 4/11
      Y43H11AL.1a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1a.2:c.425_536+13del
        cDNA_position: 446-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/8
        Exon_number: 4/9
      Y43H11AL.1a.4 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y43H11AL.1a.4:c.425_536+13del
        cDNA_position: 448-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/9
        Exon_number: 4/10
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 8752/8753-8877/8878 (125 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele