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WormBase Tree Display for Variation: WBVar02144167

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Name Class

WBVar02144167NamePublic_nametm7060
Other_nameE03A3.6b.3:c.2178_2315del
E03A3.6a.1:c.5844_5981del
E03A3.6b.2:c.2178_2315del
CE30720:p.His726_Leu771del
E03A3.6b.1:c.2178_2315del
CE43495:p.His1948_Leu1993del
HGVSgCHROMOSOME_III:g.4081756_4081893del
Sequence_detailsSMapS_parentSequenceC03C10
Flanking_sequencesaaatgtactatttcagcaatccgttgtacaacttctcagtcattcaaaagtggtacggta
Mapping_targetC03C10
Source_location7CHROMOSOME_III40817554081894Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm7060_external
tm7060_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq7060
NBP_allele
StatusLive
AffectsGeneWBGene00006811
TranscriptE03A3.6a.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScE03A3.6a.1:c.5844_5981del
HGVSpCE43495:p.His1948_Leu1993del
cDNA_position5928-6065
CDS_position5844-5981
Protein_position1948-1994
Exon_number25/28
Codon_changecaTATGTCAGCTCTATTCCATGCTTTCCATCTATGTCAACTATGGACTGTCTATTGTGAAAGAGCTGCAACTTACAGTTCTACAACTGCTTTTGCTCATTTGGTTGATTTCTGGGCTCGTGTAACTCCCGCTATTCTACAa/caa
Amino_acid_changeHMSALFHAFHLCQLWTVYCERAATYSSTTAFAHLVDFWARVTPAILQ/Q
E03A3.6b.3VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScE03A3.6b.3:c.2178_2315del
HGVSpCE30720:p.His726_Leu771del
cDNA_position2223-2360
CDS_position2178-2315
Protein_position726-772
Exon_number11/14
Codon_changecaTATGTCAGCTCTATTCCATGCTTTCCATCTATGTCAACTATGGACTGTCTATTGTGAAAGAGCTGCAACTTACAGTTCTACAACTGCTTTTGCTCATTTGGTTGATTTCTGGGCTCGTGTAACTCCCGCTATTCTACAa/caa
Amino_acid_changeHMSALFHAFHLCQLWTVYCERAATYSSTTAFAHLVDFWARVTPAILQ/Q
E03A3.6b.2VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScE03A3.6b.2:c.2178_2315del
HGVSpCE30720:p.His726_Leu771del
cDNA_position2294-2431
CDS_position2178-2315
Protein_position726-772
Exon_number12/15
Codon_changecaTATGTCAGCTCTATTCCATGCTTTCCATCTATGTCAACTATGGACTGTCTATTGTGAAAGAGCTGCAACTTACAGTTCTACAACTGCTTTTGCTCATTTGGTTGATTTCTGGGCTCGTGTAACTCCCGCTATTCTACAa/caa
Amino_acid_changeHMSALFHAFHLCQLWTVYCERAATYSSTTAFAHLVDFWARVTPAILQ/Q
E03A3.6b.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScE03A3.6b.1:c.2178_2315del
HGVSpCE30720:p.His726_Leu771del
cDNA_position5862-5999
CDS_position2178-2315
Protein_position726-772
Exon_number24/27
Codon_changecaTATGTCAGCTCTATTCCATGCTTTCCATCTATGTCAACTATGGACTGTCTATTGTGAAAGAGCTGCAACTTACAGTTCTACAACTGCTTTTGCTCATTTGGTTGATTTCTGGGCTCGTGTAACTCCCGCTATTCTACAa/caa
Amino_acid_changeHMSALFHAFHLCQLWTVYCERAATYSSTTAFAHLVDFWARVTPAILQ/Q
IsolationMutagenTMP/UV
GeneticsMapIII
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark[C03C10] 304/305-[C03C10]442/443 (138 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele