WormBase Tree Display for Variation: WBVar02143979

WBVar02143979 Name: Public_name: tm7371
    Other_name: F59E12.6a.1:c.288_483+19del
      F59E12.6a.2:c.288_483+19del
      F59E12.6b.1:c.147_342+19del
      F59E12.16c.1:n.735_930+19del
    HGVSg: CHROMOSOME_II:g.5628802_5629016del
  Sequence_details: SMap: S_parent: Sequence: F59E12
    Flanking_sequences: taaaaaccacagaaactcagtttttgtagt tgcacaatgcaggataaccaacatgacgaa
    Mapping_target: F59E12
    Source_location: 7 CHROMOSOME_II 5628801 5629017 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm7371_external
      tm7371_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 7371
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00305468
      WBGene00019122
      WBGene00235270
    Transcript: F59E12.6a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59E12.6a.2:c.288_483+19del
        cDNA_position: 923-?
        CDS_position: 288-?
        Protein_position: 96-?
        Intron_number: 3/5
        Exon_number: 3/6
      F59E12.18
      F59E12.6b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59E12.6b.1:c.147_342+19del
        cDNA_position: 1266-?
        CDS_position: 147-?
        Protein_position: 49-?
        Intron_number: 4/5
        Exon_number: 4/6
      F59E12.6a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59E12.6a.1:c.288_483+19del
        cDNA_position: 602-?
        CDS_position: 288-?
        Protein_position: 96-?
        Intron_number: 6/8
        Exon_number: 6/9
    Pseudogene: F59E12.16c VEP_consequence: splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59E12.16c.1:n.735_930+19del
        cDNA_position: 735-?
        Intron_number: 4/7
        Exon_number: 4/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 11368/11369-11583/11584 (215 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele