WormBase Tree Display for Variation: WBVar02141110

WBVar02141110 Name: Public_name: tm6823
    Other_name: F53H4.5.1:c.398_1356+38delinsGCGAGGTTTCGTTGAGGGCCGGCAGACGAGAGATAGAGATGGAAAGAAAACGAAAAAGTTGTTCGGTTTTTGTGGTGTTCTGTGTTCCAAAGTTTTGCCAAAGGCCATTGCTGTGAAAGAACGTGGTGTCAGGTTGTCCCATCACGGTTTGATCTACAATAAATGCGGAAGATTTTGTCCAGAAAAGTGTGACGTCAGCACGTTCTTAACCGTGCGACGACAGTTGGAATTTCTGCGTCTCATTTTCTGCAATTTTTGTAGATCACACCGGGATGGGACACTCTGACTCCACGTGTGAAAAGGGAAAAATACAATGAACATTGAATTTACATAAAAAAGGAAAAACAGATTTTAGTATGATATGACTC
    HGVSg: CHROMOSOME_X:g.15882221_15884298delinsGCGAGGTTTCGTTGAGGGCCGGCAGACGAGAGATAGAGATGGAAAGAAAACGAAAAAGTTGTTCGGTTTTTGTGGTGTTCTGTGTTCCAAAGTTTTGCCAAAGGCCATTGCTGTGAAAGAACGTGGTGTCAGGTTGTCCCATCACGGTTTGATCTACAATAAATGCGGAAGATTTTGTCCAGAAAAGTGTGACGTCAGCACGTTCTTAACCGTGCGACGACAGTTGGAATTTCTGCGTCTCATTTTCTGCAATTTTTGTAGATCACACCGGGATGGGACACTCTGACTCCACGTGTGAAAAGGGAAAAATACAATGAACATTGAATTTACATAAAAAAGGAAAAACAGATTTTAGTATGATATGACTC
  Sequence_details: SMap: S_parent: Sequence: F53H4
    Flanking_sequences: ctgtaagagcaaataaagacaagcagaagg aactctattaatgcagtaatttgtagcgtg
    Mapping_target: F53H4
    Source_location: 7 CHROMOSOME_X 15882220 15884299 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: GCGAGGTTTCGTTGAGGGCCGGCAGACGAGAGATAGAGATGGAAAGAAAACGAAAAAGTTGTTCGGTTTTTGTGGTGTTCTGTGTTCCAAAGTTTTGCCAAAGGCCATTGCTGTGAAAGAACGTGGTGTCAGGTTGTCCCATCACGGTTTGATCTACAATAAATGCGGAAGATTTTGTCCAGAAAAGTGTGACGTCAGCACGTTCTTAACCGTGCGACGACAGTTGGAATTTCTGCGTCTCATTTTCTGCAATTTTTGTAGATCACACCGGGATGGGACACTCTGACTCCACGTGTGAAAAGGGAAAAATACAATGAACATTGAATTTACATAAAAAAGGAAAAACAGATTTTAGTATGATATGACTC
      Deletion
    PCR_product: tm6823_external
      tm6823_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6823
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00010010
    Transcript: F53H4.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53H4.5.1:c.398_1356+38delinsGCGAGGTTTCGTTGAGGGCCGGCAGACGAGAGATAGAGATGGAAAGAAAACGAAAAAGTTGTTCGGTTTTTGTGGTGTTCTGTGTTCCAAAGTTTTGCCAAAGGCCATTGCTGTGAAAGAACGTGGTGTCAGGTTGTCCCATCACGGTTTGATCTACAATAAATGCGGAAGATTTTGTCCAGAAAAGTGTGACGTCAGCACGTTCTTAACCGTGCGACGACAGTTGGAATTTCTGCGTCTCATTTTCTGCAATTTTTGTAGATCACACCGGGATGGGACACTCTGACTCCACGTGTGAAAAGGGAAAAATACAATGAACATTGAATTTACATAAAAAAGGAAAAACAGATTTTAGTATGATATGACTC
        cDNA_position: 409-?
        CDS_position: 398-?
        Protein_position: 133-?
        Intron_number: 3-6/7
        Exon_number: 3-6/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 30934/30935-GCGAGGTTTCGTTGAGGGCCGGCAGACGAGAGATAGAGATGGAAAGAAAACGAAAAAGTTGTTCGGTTTTTGTGGTGTTCTGTGTTCCAAAGTTTTGCCAAAGGCCATTGCTGTGAAAGAACGTGGTGTCAGGTTGTCCCATCACGGTTTGATCTACAATAAATGCGGAAGATTTTGTCCAGAAAAGTGTGACGTCAGCACGTTCTTAACCGTGCGACGACAGTTGGAATTTCTGCGTCTCATTTTCTGCAATTTTTGTAGATCACACCGGGATGGGACACTCTGACTCCACGTGTGAAAAGGGAAAAATACAATGAACATTGAATTTACATAAAAAAGGAAAAACAGATTTTAGTATGATATGACTC-33012/33013 (2078bp deletion + 368 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele