WormBase Tree Display for Variation: WBVar02131248
expand all nodes | collapse all nodes | view schema
| WBVar02131248 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h12426 | ||||
| Other_name (11) | ||||||
| HGVSg | CHROMOSOME_II:g.14949634G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | E01F3 | ||
| Flanking_sequences | GCCAGCAGATGCCAACGGAAAAGAGATCCAGCCGTTCGGA | TACTAGTGGTGAACAAATTGCAGAAACGCGTCAACTCGCC | ||||
| Mapping_target | CHROMOSOME_II | |||||
| Source_location | 200 | CHROMOSOME_II | 14949537 | 14949537 | ||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023780 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00008443 | ||||
| Transcript | E01F3.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1f.1:c.405-157G>A | |||||
| Intron_number | 3/10 | |||||
| E01F3.1h.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1h.1:c.393-157G>A | |||||
| Intron_number | 3/11 | |||||
| E01F3.1j.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1j.1:c.546-157G>A | |||||
| Intron_number | 4/11 | |||||
| E01F3.1g.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1g.1:c.405-157G>A | |||||
| Intron_number | 4/12 | |||||
| E01F3.1i.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1i.1:c.705-157G>A | |||||
| Intron_number | 5/12 | |||||
| E01F3.1b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1b.1:c.546-157G>A | |||||
| Intron_number | 6/14 | |||||
| E01F3.1c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1c.1:c.393-157G>A | |||||
| Intron_number | 3/11 | |||||
| E01F3.1e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1e.1:c.705-157G>A | |||||
| Intron_number | 5/12 | |||||
| E01F3.1a.1 | VEP_consequence | 5_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | E01F3.1a.1:c.-116G>A | |||||
| cDNA_position | 98 | |||||
| Exon_number | 1/10 | |||||
| E01F3.1d.1 (12) | ||||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
