WormBase Tree Display for Variation: WBVar02126722
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| WBVar02126722 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h14502 | ||||
| Other_name | Y71F9AL.10d.1:c.477C>T | |||||
| CE53172:p.Cys180= | ||||||
| Y71F9AL.10e.1:c.435C>T | ||||||
| CE53452:p.Cys145= | ||||||
| CE31386:p.Cys182= | ||||||
| Y71F9AL.10b.1:c.483C>T | ||||||
| CE53255:p.Cys161= | ||||||
| Y71F9AL.10c.1:c.540C>T | ||||||
| CE53378:p.Cys159= | ||||||
| Y71F9AL.10a.1:c.546C>T | ||||||
| HGVSg | CHROMOSOME_I:g.2869230C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | Y71F9AL | ||
| Flanking_sequences | TCAGATGTATCGATGATTGGTTCAAACGGAAGAATTGCTG | CCCGAACATCCCGGTGATGATTGAATAAAAAAATATCTTC | ||||
| Mapping_target | CHROMOSOME_I | |||||
| Source_location | 200 | CHROMOSOME_I | 2869231 | 2869231 | ||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023876 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00022115 | ||||
| Transcript | Y71F9AL.10e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | Y71F9AL.10e.1:c.435C>T | |||||
| HGVSp | CE53452:p.Cys145= | |||||
| cDNA_position | 435 | |||||
| CDS_position | 435 | |||||
| Protein_position | 145 | |||||
| Exon_number | 5/5 | |||||
| Codon_change | tgC/tgT | |||||
| Amino_acid_change | C | |||||
| Y71F9AL.10d.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y71F9AL.10d.1:c.477C>T | |||||
| HGVSp | CE53378:p.Cys159= | |||||
| cDNA_position | 511 | |||||
| CDS_position | 477 | |||||
| Protein_position | 159 | |||||
| Exon_number | 6/7 | |||||
| Codon_change | tgC/tgT | |||||
| Amino_acid_change | C | |||||
| Y71F9AL.10a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y71F9AL.10a.1:c.546C>T | |||||
| HGVSp | CE31386:p.Cys182= | |||||
| cDNA_position | 578 | |||||
| CDS_position | 546 | |||||
| Protein_position | 182 | |||||
| Exon_number | 7/8 | |||||
| Codon_change | tgC/tgT | |||||
| Amino_acid_change | C | |||||
| Y71F9AL.10c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y71F9AL.10c.1:c.540C>T | |||||
| HGVSp | CE53172:p.Cys180= | |||||
| cDNA_position | 574 | |||||
| CDS_position | 540 | |||||
| Protein_position | 180 | |||||
| Exon_number | 7/8 | |||||
| Codon_change | tgC/tgT | |||||
| Amino_acid_change | C | |||||
| Y71F9AL.10b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y71F9AL.10b.1:c.483C>T | |||||
| HGVSp | CE53255:p.Cys161= | |||||
| cDNA_position | 517 | |||||
| CDS_position | 483 | |||||
| Protein_position | 161 | |||||
| Exon_number | 6/7 | |||||
| Codon_change | tgC/tgT | |||||
| Amino_acid_change | C | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
