WormBase Tree Display for Variation: WBVar02102053
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WBVar02102053 | Name | Public_name | WBVar02102053 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00832320 | |||||||
C29F9.6.3:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | ||||||||
C29F9.6.1:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | ||||||||
C29F9.6.2:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | ||||||||
HGVSg | CHROMOSOME_III:g.115794_115824delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | |||||||
Sequence_details | SMap | S_parent | Sequence | C29F9 | ||||
Flanking_sequences | TCTAAAGACTCGATTCTCTAGTTTGATTTT | TGCTCCACGATGAAGGAGGTGATCGGGCAT | ||||||
Mapping_target | C29F9 | |||||||
Source_location | 225 | CHROMOSOME_III | 115793 | 115823 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | TGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00016221 | ||||||
Transcript | C29F9.6.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | C29F9.6.1:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | |||||||
cDNA_position | ?-334 | |||||||
CDS_position | ?-162 | |||||||
Protein_position | ?-54 | |||||||
Intron_number | 5/8 | |||||||
Exon_number | 6/9 | |||||||
C29F9.6.3 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C29F9.6.3:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | |||||||
cDNA_position | ?-257 | |||||||
CDS_position | ?-162 | |||||||
Protein_position | ?-54 | |||||||
Intron_number | 4/7 | |||||||
Exon_number | 5/8 | |||||||
C29F9.6.2 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C29F9.6.2:c.136-4_162delinsTGCAGATAACTCAGCAGTGCCCAGTTCAGAAT | |||||||
cDNA_position | ?-309 | |||||||
CDS_position | ?-162 | |||||||
Protein_position | ?-54 | |||||||
Intron_number | 3/6 | |||||||
Exon_number | 4/7 | |||||||
Method | WGS_Flibotte |