WormBase Tree Display for Variation: WBVar02096373
expand all nodes | collapse all nodes | view schema
| WBVar02096373 | Name | Public_name | WBVar02096373 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | cewivar00826431 | |||||||
| CE44640:p.Gly187GlufsTer42 | ||||||||
| T19C9.10b.1:c.497_503delinsAAAGCCGCGTTATA | ||||||||
| T19C9.10a.2:c.560_566delinsAAAGCCGCGTTATA | ||||||||
| CE48101:p.Gly166GlufsTer? | ||||||||
| T19C9.10a.1:c.560_566delinsAAAGCCGCGTTATA | ||||||||
| HGVSg | CHROMOSOME_V:g.17238054_17238060delinsAAAGCCGCGTTATA | |||||||
| Sequence_details | SMap | S_parent | Sequence | T19C9 | ||||
| Flanking_sequences | GAGATGAAGATTACTTTTACATTGCTAGAG | TTCACAAGCCGATACAGATATTCCCAAAAA | ||||||
| Mapping_target | T19C9 | |||||||
| Source_location | 225 | CHROMOSOME_V | 17238029 | 17238035 | From_analysis | Million_mutation_project_reanalysis | ||
| Type_of_mutation | Insertion | AAAGCCGCGTTATA | ||||||
| Deletion | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | ||||||
| Laboratory | VC | |||||||
| Analysis | Million_mutation_project_reanalysis | |||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00050934 | ||||||
| Transcript | T19C9.10a.2 | VEP_consequence | frameshift_variant | |||||
| VEP_impact | HIGH | |||||||
| HGVSc | T19C9.10a.2:c.560_566delinsAAAGCCGCGTTATA | |||||||
| HGVSp | CE44640:p.Gly187GlufsTer42 | |||||||
| cDNA_position | 675-681 | |||||||
| CDS_position | 560-566 | |||||||
| Protein_position | 187-189 | |||||||
| Exon_number | 5/7 | |||||||
| Codon_change | gGGAGCCGt/gAAAGCCGCGTTATAt | |||||||
| Amino_acid_change | GSR/ESRVIX | |||||||
| T19C9.10b.1 | VEP_consequence | frameshift_variant | ||||||
| VEP_impact | HIGH | |||||||
| HGVSc | T19C9.10b.1:c.497_503delinsAAAGCCGCGTTATA | |||||||
| HGVSp | CE48101:p.Gly166GlufsTer? | |||||||
| cDNA_position | 497-503 | |||||||
| CDS_position | 497-503 | |||||||
| Protein_position | 166-168 | |||||||
| Exon_number | 4/4 | |||||||
| Codon_change | gGGAGCCGt/gAAAGCCGCGTTATAt | |||||||
| Amino_acid_change | GSR/ESRVIX | |||||||
| T19C9.10a.1 | VEP_consequence | frameshift_variant | ||||||
| VEP_impact | HIGH | |||||||
| HGVSc | T19C9.10a.1:c.560_566delinsAAAGCCGCGTTATA | |||||||
| HGVSp | CE44640:p.Gly187GlufsTer42 | |||||||
| cDNA_position | 675-681 | |||||||
| CDS_position | 560-566 | |||||||
| Protein_position | 187-189 | |||||||
| Exon_number | 5/9 | |||||||
| Codon_change | gGGAGCCGt/gAAAGCCGCGTTATAt | |||||||
| Amino_acid_change | GSR/ESRVIX | |||||||
| Method | WGS_Flibotte |
