WormBase Tree Display for Variation: WBVar02075138

WBVar02075138 Name: Public_name: WBVar02075138
    Other_name: cewivar00804451
    HGVSg: CHROMOSOME_II:g.5630027_5631803del
  Sequence_details: SMap: S_parent: Sequence: F59E12
    Flanking_sequences: AACTGATTTTAACTATTTCAATACTGTATA AAAATCAAGAGCTTGTAAATCAGTTTTTGG
    Mapping_target: F59E12
    Source_location: 225 CHROMOSOME_II 5630009 5631785 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (29)
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00019120
      WBGene00305468
      WBGene00019122
      WBGene00235270
    Transcript: F59E12.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-402
        CDS_position: ?-394
        Protein_position: ?-132
        Intron_number: 2/6
        Exon_number: 1-3/7
      F59E12.6a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-259
        Intron_number: 1-2/8
        Exon_number: 1-3/9
      F59E12.6a.2 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-53
        Exon_number: 1/6
      F59E12.18
      F59E12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-396
        CDS_position: ?-394
        Protein_position: ?-132
        Intron_number: 2/6
        Exon_number: 1-3/7
      F59E12.6b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-255
        Intron_number: 1-2/5
        Exon_number: 1-3/6
    Pseudogene: F59E12.16c VEP_consequence: splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-251
        Intron_number: 1-2/7
        Exon_number: 1-3/8
      F59E12.16a VEP_consequence: splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-257
        Intron_number: 1-2/2
        Exon_number: 1-3/3
      F59E12.16b VEP_consequence: splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-251
        Intron_number: 1-2/2
        Exon_number: 1-3/3
  Method: WGS_Flibotte