WormBase Tree Display for Variation: WBVar01990108
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WBVar01990108 | Name | Public_name | WBVar01990108 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00716838 | |||||||
T04C9.3.1:c.100_115del | ||||||||
CE04878:p.Arg44SerfsTer5 | ||||||||
HGVSg | CHROMOSOME_III:g.5985739_5985754del | |||||||
Sequence_details | SMap | S_parent | Sequence | T04C9 | ||||
Flanking_sequences | TTTGGGTTGATGGAATGTGATGGAATGAGA | AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTGAGCA | ||||||
Mapping_target | T04C9 | |||||||
Source_location | 225 | CHROMOSOME_III | 5985689 | 5985704 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00020211 | ||||||
Transcript | T04C9.3.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | T04C9.3.1:c.100_115del | |||||||
HGVSp | CE04878:p.Arg44SerfsTer5 | |||||||
cDNA_position | 100-115 | |||||||
CDS_position | 100-115 | |||||||
Protein_position | 34-39 | |||||||
Exon_number | 1/1 | |||||||
Codon_change | AGAGAGAGAGAGAGAGag/ag | |||||||
Amino_acid_change | RERERE/X | |||||||
Method | WGS_Flibotte |