WormBase Tree Display for Variation: WBVar01975035
expand all nodes | collapse all nodes | view schema
WBVar01975035 | Name | Public_name | WBVar01975035 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00701028 | |||||||
CE47766:p.Ile68AsnfsTer6 | ||||||||
CE45432:p.Ile105AsnfsTer6 | ||||||||
C54D10.8b.1:c.203_209del | ||||||||
C54D10.8a.1:c.314_320del | ||||||||
HGVSg | CHROMOSOME_V:g.12446547_12446553del | |||||||
Sequence_details | SMap | S_parent | Sequence | C54D10 | ||||
Flanking_sequences | TTATTATTTCTCATTATCTCCTCAAATTGT | TCATTTGATCTTCCAATCTTAAAACAAATA | ||||||
Mapping_target | C54D10 | |||||||
Source_location | 225 | CHROMOSOME_V | 12446528 | 12446534 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00008302 | ||||||
Transcript | C54D10.8a.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | C54D10.8a.1:c.314_320del | |||||||
HGVSp | CE45432:p.Ile105AsnfsTer6 | |||||||
cDNA_position | 353-359 | |||||||
CDS_position | 314-320 | |||||||
Protein_position | 105-107 | |||||||
Exon_number | 4/8 | |||||||
Codon_change | aTAAATACa/aa | |||||||
Amino_acid_change | INT/X | |||||||
C54D10.8b.1 | VEP_consequence | frameshift_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C54D10.8b.1:c.203_209del | |||||||
HGVSp | CE47766:p.Ile68AsnfsTer6 | |||||||
cDNA_position | 203-209 | |||||||
CDS_position | 203-209 | |||||||
Protein_position | 68-70 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | aTAAATACa/aa | |||||||
Amino_acid_change | INT/X | |||||||
Method | WGS_Flibotte |