WormBase Tree Display for Variation: WBVar01972506
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WBVar01972506 | Name | Public_name | WBVar01972506 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00698483 | |||||||
T27C4.4d.1:c.1978_1983del | ||||||||
CE51633:p.Ala526_Ala527del | ||||||||
CE33331:p.Ala661_Ala662del | ||||||||
T27C4.4e.1:c.1573_1578del | ||||||||
CE21212:p.Ala661_Ala662del | ||||||||
CE21211:p.Ala661_Ala662del | ||||||||
T27C4.4b.2:c.1978_1983del | ||||||||
T27C4.4b.1:c.1978_1983del | ||||||||
T27C4.4a.1:c.1978_1983del | ||||||||
HGVSg | CHROMOSOME_V:g.3707117_3707122del | |||||||
Sequence_details | SMap | S_parent | Sequence | T27C4 | ||||
Flanking_sequences | GCCTCAAATGGAACTCCAGCTTCTCAGAAG | GCCACGGCGGCGGTGAACACGTTGACTCCA | ||||||
Mapping_target | T27C4 | |||||||
Source_location | 225 | CHROMOSOME_V | 3707104 | 3707109 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00003025 | ||||||
Transcript | T27C4.4d.1 | VEP_consequence | inframe_deletion | |||||
VEP_impact | MODERATE | |||||||
HGVSc | T27C4.4d.1:c.1978_1983del | |||||||
HGVSp | CE33331:p.Ala661_Ala662del | |||||||
cDNA_position | 2002-2007 | |||||||
CDS_position | 1978-1983 | |||||||
Protein_position | 660-661 | |||||||
Exon_number | 4/9 | |||||||
Codon_change | GCGGCT/- | |||||||
Amino_acid_change | AA/- | |||||||
T27C4.4b.2 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T27C4.4b.2:c.1978_1983del | |||||||
HGVSp | CE21212:p.Ala661_Ala662del | |||||||
cDNA_position | 2002-2007 | |||||||
CDS_position | 1978-1983 | |||||||
Protein_position | 660-661 | |||||||
Exon_number | 4/9 | |||||||
Codon_change | GCGGCT/- | |||||||
Amino_acid_change | AA/- | |||||||
T27C4.4a.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T27C4.4a.1:c.1978_1983del | |||||||
HGVSp | CE21211:p.Ala661_Ala662del | |||||||
cDNA_position | 1995-2000 | |||||||
CDS_position | 1978-1983 | |||||||
Protein_position | 660-661 | |||||||
Exon_number | 4/10 | |||||||
Codon_change | GCGGCT/- | |||||||
Amino_acid_change | AA/- | |||||||
T27C4.4e.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T27C4.4e.1:c.1573_1578del | |||||||
HGVSp | CE51633:p.Ala526_Ala527del | |||||||
cDNA_position | 1573-1578 | |||||||
CDS_position | 1573-1578 | |||||||
Protein_position | 525-526 | |||||||
Exon_number | 1/5 | |||||||
Codon_change | GCGGCT/- | |||||||
Amino_acid_change | AA/- | |||||||
T27C4.4b.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T27C4.4b.1:c.1978_1983del | |||||||
HGVSp | CE21212:p.Ala661_Ala662del | |||||||
cDNA_position | 1995-2000 | |||||||
CDS_position | 1978-1983 | |||||||
Protein_position | 660-661 | |||||||
Exon_number | 4/9 | |||||||
Codon_change | GCGGCT/- | |||||||
Amino_acid_change | AA/- | |||||||
Method | WGS_Flibotte |