WormBase Tree Display for Variation: WBVar01719886

WBVar01719886 Name: Public_name: WBVar01719886
    Other_name: cewivar00418021
      F59E12.16c.1:n.1588T>G
      F59E12.6a.2:c.1141T>G
      F59E12.6a.1:c.1141T>G
      F59E12.6b.1:c.1000T>G
      CE33407:p.Ser381Ala
      CE33408:p.Ser334Ala
      F59E12.15.1:c.-340T>G
    HGVSg: CHROMOSOME_II:g.5627603A>C
  Sequence_details: SMap: S_parent: Sequence: F59E12
    Flanking_sequences: CCAATAAGCACGCTGAAGCCGTCTTACTGG TCCTGTTCCAAATGATTGAGCCGCAACATC
    Mapping_target: F59E12
    Source_location: 225 CHROMOSOME_II 5627585 5627585 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00305468
      WBGene00019122
      WBGene00235270
      WBGene00235269
    Transcript: F59E12.6a.2 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F59E12.6a.2:c.1141T>G
        HGVSp: CE33407:p.Ser381Ala
        cDNA_position: 1776
        CDS_position: 1141
        Protein_position: 381
        Exon_number: 5/6
        Codon_change: Tcc/Gcc
        Amino_acid_change: S/A
      F59E12.18
      F59E12.6b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F59E12.6b.1:c.1000T>G
        HGVSp: CE33408:p.Ser334Ala
        cDNA_position: 2119
        CDS_position: 1000
        Protein_position: 334
        Exon_number: 6/6
        Codon_change: Tcc/Gcc
        Amino_acid_change: S/A
      F59E12.15.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: F59E12.15.1:c.-340T>G
        cDNA_position: 774
        Exon_number: 1/5
      F59E12.6a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F59E12.6a.1:c.1141T>G
        HGVSp: CE33407:p.Ser381Ala
        cDNA_position: 1455
        CDS_position: 1141
        Protein_position: 381
        Exon_number: 8/9
        Codon_change: Tcc/Gcc
        Amino_acid_change: S/A
    Pseudogene: F59E12.16c VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: F59E12.16c.1:n.1588T>G
        cDNA_position: 1588
        Exon_number: 6/8
  Method: WGS_Flibotte