WormBase Tree Display for Variation: WBVar01502838
expand all nodes | collapse all nodes | view schema
WBVar01502838 | Name | Public_name | WBVar01502838 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00005456 | |||||||
Y43H11AL.1e.1:c.115-42A>G | ||||||||
Y43H11AL.1a.1:c.*116-42A>G | ||||||||
Y43H11AL.1c.1:c.1339-42A>G | ||||||||
Y43H11AL.1d.1:c.406-42A>G | ||||||||
Y43H11AL.1b.1:c.1381-42A>G | ||||||||
Y43H11AL.1a.3:c.*116-42A>G | ||||||||
Y43H11AL.1a.4:c.*227A>G | ||||||||
HGVSg | CHROMOSOME_II:g.223253T>C | |||||||
Sequence_details | SMap | S_parent | Sequence | Y43H11AL | ||||
Flanking_sequences | ATATATAAATTTTAAGTTGTTTTGGAAAAA | TCGATTTTAAATTTTTTTAAGGAAAAAAAA | ||||||
Mapping_target | Y43H11AL | |||||||
Source_location | 225 | CHROMOSOME_II | 223253 | 223253 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | T | C | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021545 | ||||||
Transcript | Y43H11AL.1a.3 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1a.3:c.*116-42A>G | |||||||
Intron_number | 10/10 | |||||||
Y43H11AL.1e.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1e.1:c.115-42A>G | |||||||
Intron_number | 2/2 | |||||||
Y43H11AL.1c.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1c.1:c.1339-42A>G | |||||||
Intron_number | 8/8 | |||||||
Y43H11AL.1d.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1d.1:c.406-42A>G | |||||||
Intron_number | 4/4 | |||||||
Y43H11AL.1b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1b.1:c.1381-42A>G | |||||||
Intron_number | 10/11 | |||||||
Y43H11AL.1a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1a.1:c.*116-42A>G | |||||||
Intron_number | 10/10 | |||||||
Y43H11AL.1a.4 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y43H11AL.1a.4:c.*227A>G | |||||||
cDNA_position | 1354 | |||||||
Exon_number | 10/10 | |||||||
Method | WGS_Flibotte |