WormBase Tree Display for Variation: WBVar01472661
expand all nodes | collapse all nodes | view schema
| WBVar01472661 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01472661 | ||||
| Other_name | C05G5.2b.1:c.1683A>G | |||||
| C05G5.2a.1:c.1683A>G | ||||||
| CE52603:p.Ser561= | ||||||
| CE05225:p.Ser561= | ||||||
| HGVSg | CHROMOSOME_X:g.14749877A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | C05G5 | ||
| Flanking_sequences | GTCACTCTTTGATGATAGTGACTCTGACTC | GACTTGTTCTCTCTACCCACAAAACCGAAA | ||||
| Mapping_target | C05G5 | |||||
| Type_of_mutation | Substitution | a | g | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004601 | From_analysis | WGS_Andersen | |||
| WBStrain00005305 | From_analysis | WGS_Andersen | ||||
| WBStrain00005315 | From_analysis | WGS_Andersen | ||||
| WBStrain00030546 | From_analysis | WGS_Andersen | ||||
| WBStrain00030851 | From_analysis | WGS_Andersen | ||||
| WBStrain00031279 | From_analysis | WGS_Andersen | ||||
| WBStrain00031284 | From_analysis | WGS_Andersen | ||||
| WBStrain00031286 | From_analysis | WGS_Andersen | ||||
| WBStrain00031301 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193357963 | ||
| dbSNP_ss | ss | 295533882 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00007348 | ||||
| Transcript | C05G5.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | C05G5.2a.1:c.1683A>G | |||||
| HGVSp | CE05225:p.Ser561= | |||||
| cDNA_position | 1720 | |||||
| CDS_position | 1683 | |||||
| Protein_position | 561 | |||||
| Exon_number | 9/12 | |||||
| Codon_change | tcA/tcG | |||||
| Amino_acid_change | S | |||||
| C05G5.2b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | C05G5.2b.1:c.1683A>G | |||||
| HGVSp | CE52603:p.Ser561= | |||||
| cDNA_position | 1720 | |||||
| CDS_position | 1683 | |||||
| Protein_position | 561 | |||||
| Exon_number | 9/12 | |||||
| Codon_change | tcA/tcG | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
