WormBase Tree Display for Variation: WBVar01471469
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WBVar01471469 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01471469 | ||||
Other_name | cewivar00301175 | |||||
CE53657:p.Asn230= | ||||||
W03G11.4.2:c.690T>C | ||||||
W03G11.4.1:c.690T>C | ||||||
W03G11.4.4:c.690T>C | ||||||
W03G11.4.3:c.690T>C | ||||||
HGVSg | CHROMOSOME_X:g.12078875A>G | |||||
Sequence_details | SMap | S_parent | Sequence | W03G11 | ||
Flanking_sequences | TACCCCAAAAAAAGGAAACAGTGGCTCGCG | TTTGGCACTATGTCAATCGGTCGGCTGCGT | ||||
Mapping_target | W03G11 | |||||
Type_of_mutation | Substitution | a | g | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (91) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193356771 | ||
dbSNP_ss | ss | 295532690 | ||||
Status | Live | |||||
Affects | Gene | WBGene00012226 | ||||
Transcript | W03G11.4.4 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | W03G11.4.4:c.690T>C | |||||
HGVSp | CE53657:p.Asn230= | |||||
cDNA_position | 746 | |||||
CDS_position | 690 | |||||
Protein_position | 230 | |||||
Exon_number | 3/7 | |||||
Codon_change | aaT/aaC | |||||
Amino_acid_change | N | |||||
W03G11.4.2 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | W03G11.4.2:c.690T>C | |||||
HGVSp | CE53657:p.Asn230= | |||||
cDNA_position | 967 | |||||
CDS_position | 690 | |||||
Protein_position | 230 | |||||
Exon_number | 4/8 | |||||
Codon_change | aaT/aaC | |||||
Amino_acid_change | N | |||||
W03G11.4.3 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | W03G11.4.3:c.690T>C | |||||
HGVSp | CE53657:p.Asn230= | |||||
cDNA_position | 951 | |||||
CDS_position | 690 | |||||
Protein_position | 230 | |||||
Exon_number | 4/7 | |||||
Codon_change | aaT/aaC | |||||
Amino_acid_change | N | |||||
W03G11.4.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | W03G11.4.1:c.690T>C | |||||
HGVSp | CE53657:p.Asn230= | |||||
cDNA_position | 740 | |||||
CDS_position | 690 | |||||
Protein_position | 230 | |||||
Exon_number | 3/6 | |||||
Codon_change | aaT/aaC | |||||
Amino_acid_change | N | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |