WormBase Tree Display for Variation: WBVar01466280
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WBVar01466280 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01466280 | ||||
Other_name | Y116F11B.12c.1:c.1359-1082T>A | |||||
Y116F11B.12b.1:c.1359-1996T>A | ||||||
Y116F11B.12a.2:c.1359-1470T>A | ||||||
Y116F11B.13.1:c.169-314A>T | ||||||
Y116F11B.12a.1:c.1359-1470T>A | ||||||
HGVSg | CHROMOSOME_V:g.19884517A>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y116F11B | ||
Flanking_sequences | GTGGTGTTTGCGGACTTGGCACCTGAGTTG | CGGAATAATGCACTAAAGCGTTGAAAAATG | ||||
Mapping_target | Y116F11B | |||||
Type_of_mutation | Substitution | a | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (133) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193351877 | ||
dbSNP_ss | ss | 295527796 | ||||
Status | Live | |||||
Affects | Gene | WBGene00001629 | ||||
WBGene00013828 | ||||||
Transcript | Y116F11B.12b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y116F11B.12b.1:c.1359-1996T>A | |||||
Intron_number | 6/7 | |||||
Y116F11B.12a.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y116F11B.12a.2:c.1359-1470T>A | |||||
Intron_number | 7/10 | |||||
Y116F11B.12a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y116F11B.12a.1:c.1359-1470T>A | |||||
Intron_number | 8/11 | |||||
Y116F11B.13.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y116F11B.13.1:c.169-314A>T | |||||
Intron_number | 2/3 | |||||
Y116F11B.12c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y116F11B.12c.1:c.1359-1082T>A | |||||
Intron_number | 6/6 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |