WormBase Tree Display for Variation: WBVar01455009
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| WBVar01455009 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01455009 | ||||
| Other_name (15) | ||||||
| HGVSg | CHROMOSOME_IV:g.13485689T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | Y38H8A | ||
| Flanking_sequences | AGTTTCGATATTCTCATTCGTGAAGCAGTA | CCAAAGTTTTGATATGAATTCGCCAGAAGG | ||||
| Mapping_target | Y38H8A | |||||
| Type_of_mutation | Substitution | t | a | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain (21) | ||||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | Million_mutation_project_reanalysis | |||||
| WGS_Andersen | ||||||
| DB_info | Database | dbSNP_rs | rs | 193340666 | ||
| dbSNP_ss | ss | 295516585 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00012868 | ||||
| WBGene00305711 | ||||||
| Transcript | Y45F10A.6d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6d.1:c.1758A>T | |||||
| HGVSp | CE47910:p.Gly586= | |||||
| cDNA_position | 1758 | |||||
| CDS_position | 1758 | |||||
| Protein_position | 586 | |||||
| Exon_number | 8/14 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y45F10A.6e.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6e.1:c.1758A>T | |||||
| HGVSp | CE47946:p.Gly586= | |||||
| cDNA_position | 1758 | |||||
| CDS_position | 1758 | |||||
| Protein_position | 586 | |||||
| Exon_number | 8/14 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y45F10A.6c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6c.1:c.2325A>T | |||||
| HGVSp | CE41048:p.Gly775= | |||||
| cDNA_position | 2336 | |||||
| CDS_position | 2325 | |||||
| Protein_position | 775 | |||||
| Exon_number | 13/20 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y38H8A.13 | ||||||
| Y45F10A.6g.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6g.1:c.2325A>T | |||||
| HGVSp | CE49936:p.Gly775= | |||||
| cDNA_position | 2336 | |||||
| CDS_position | 2325 | |||||
| Protein_position | 775 | |||||
| Exon_number | 13/20 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y45F10A.6f.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6f.1:c.1758A>T | |||||
| HGVSp | CE47998:p.Gly586= | |||||
| cDNA_position | 1758 | |||||
| CDS_position | 1758 | |||||
| Protein_position | 586 | |||||
| Exon_number | 8/14 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y45F10A.6a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6a.1:c.2325A>T | |||||
| HGVSp | CE40583:p.Gly775= | |||||
| cDNA_position | 2336 | |||||
| CDS_position | 2325 | |||||
| Protein_position | 775 | |||||
| Exon_number | 13/20 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Y45F10A.6b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y45F10A.6b.1:c.2325A>T | |||||
| HGVSp | CE40584:p.Gly775= | |||||
| cDNA_position | 2330 | |||||
| CDS_position | 2325 | |||||
| Protein_position | 775 | |||||
| Exon_number | 13/20 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
