WormBase Tree Display for Variation: WBVar01450981
expand all nodes | collapse all nodes | view schema
WBVar01450981 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01450981 | ||||
Other_name | cewivar00379700 | |||||
F52C12.4e.1:c.2605-77G>A | ||||||
F52C12.4h.1:c.2650-77G>A | ||||||
F52C12.4g.1:c.2644-77G>A | ||||||
F52C12.4a.1:c.2611-77G>A | ||||||
F52C12.4d.1:c.2656-77G>A | ||||||
F52C12.4b.1:c.2617-77G>A | ||||||
F52C12.4c.1:c.2650-77G>A | ||||||
F52C12.4f.1:c.2611-77G>A | ||||||
HGVSg | CHROMOSOME_IV:g.1940164G>A | |||||
Sequence_details | SMap | S_parent | Sequence | F52C12 | ||
Flanking_sequences | CCCAAAGCATGATGCAAGTGCGCTCCAATA | AAATTCCCAAATTTCGAGTAATATTCTCAT | ||||
Mapping_target | F52C12 | |||||
Type_of_mutation | Substitution | g | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (27) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193336638 | ||
dbSNP_ss | ss | 295512557 | ||||
Status | Live | |||||
Affects | Gene | WBGene00018681 | ||||
Transcript | F52C12.4d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4d.1:c.2656-77G>A | |||||
Intron_number | 16/21 | |||||
F52C12.4h.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4h.1:c.2650-77G>A | |||||
Intron_number | 16/21 | |||||
F52C12.4g.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4g.1:c.2644-77G>A | |||||
Intron_number | 17/23 | |||||
F52C12.4c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4c.1:c.2650-77G>A | |||||
Intron_number | 16/21 | |||||
F52C12.4f.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4f.1:c.2611-77G>A | |||||
Intron_number | 15/20 | |||||
F52C12.4b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4b.1:c.2617-77G>A | |||||
Intron_number | 16/22 | |||||
F52C12.4a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4a.1:c.2611-77G>A | |||||
Intron_number | 15/21 | |||||
F52C12.4e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F52C12.4e.1:c.2605-77G>A | |||||
Intron_number | 16/22 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |