WormBase Tree Display for Variation: WBVar01448216
expand all nodes | collapse all nodes | view schema
| WBVar01448216 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01448216 | ||||
| Other_name | Y39A1A.13a.1:c.920-52C>T | |||||
| Y39A1A.13b.3:c.548-52C>T | ||||||
| Y39A1A.13b.2:c.548-52C>T | ||||||
| Y39A1A.13b.1:c.548-52C>T | ||||||
| HGVSg | CHROMOSOME_III:g.10648465C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | Y39A1A | ||
| Flanking_sequences | CTAATTTTCGATTATATTGATGAGAAAAAA | ATGAAAATTTTAAGCTTATTTTTTAAAAAT | ||||
| Mapping_target | Y39A1A | |||||
| Type_of_mutation | Substitution | c | t | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain (28) | ||||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193334443 | ||
| dbSNP_ss | ss | 295510362 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00012651 | ||||
| Transcript | Y39A1A.13b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y39A1A.13b.3:c.548-52C>T | |||||
| Intron_number | 4/6 | |||||
| Y39A1A.13b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y39A1A.13b.1:c.548-52C>T | |||||
| Intron_number | 6/7 | |||||
| Y39A1A.13a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y39A1A.13a.1:c.920-52C>T | |||||
| Intron_number | 6/8 | |||||
| Y39A1A.13b.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y39A1A.13b.2:c.548-52C>T | |||||
| Intron_number | 5/7 | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
