WormBase Tree Display for Variation: WBVar01444702
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WBVar01444702 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01444702 | ||||
Other_name | cewivar00343734 | |||||
Y55D5A.1b.3:c.43-161T>A | ||||||
Y55D5A.1b.1:c.43-161T>A | ||||||
Y55D5A.1b.4:c.43-161T>A | ||||||
Y55D5A.1a.1:c.412-161T>A | ||||||
Y55D5A.1b.2:c.43-161T>A | ||||||
HGVSg | CHROMOSOME_III:g.2986903T>A | |||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | ||
Flanking_sequences | ATTGAAACGGTCAACTGTAACTCATTTAAC | TCAGGAAGCTACAGTAACCCAGGTTTTCGT | ||||
Mapping_target | Y55D5A | |||||
Type_of_mutation | Substitution | t | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00005835 | From_analysis | WGS_Andersen | |||
WBStrain00006631 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_Andersen | ||||||
WBStrain00006635 | From_analysis | WGS_Andersen | ||||
WBStrain00006636 | From_analysis | WGS_Andersen | ||||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_Andersen | ||||||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_Andersen | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193331863 | ||
dbSNP_ss | ss | 295507782 | ||||
Status | Live | |||||
Affects | Gene | WBGene00021915 | ||||
Transcript | Y55D5A.1b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.1b.3:c.43-161T>A | |||||
Intron_number | 3/5 | |||||
Y55D5A.1b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.1b.1:c.43-161T>A | |||||
Intron_number | 5/7 | |||||
Y55D5A.1b.4 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.1b.4:c.43-161T>A | |||||
Intron_number | 2/3 | |||||
Y55D5A.1b.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.1b.2:c.43-161T>A | |||||
Intron_number | 4/6 | |||||
Y55D5A.1a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.1a.1:c.412-161T>A | |||||
Intron_number | 5/7 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |