WormBase Tree Display for Variation: WBVar01435236
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| WBVar01435236 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01435236 | ||||
| Other_name | cewivar00413408 | |||||
| Y43H11AL.1d.1:c.270-1069T>G | ||||||
| Y43H11AL.1a.2:c.1084-1069T>G | ||||||
| Y43H11AL.1b.1:c.1245-1069T>G | ||||||
| Y43H11AL.1c.1:c.1203-1069T>G | ||||||
| Y43H11AL.1a.3:c.1084-1069T>G | ||||||
| Y43H11AL.1a.1:c.1084-1069T>G | ||||||
| Y43H11AL.1a.4:c.1084-1069T>G | ||||||
| HGVSg | CHROMOSOME_II:g.224866A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | Y43H11AL | ||
| Flanking_sequences | AAATTTGAATAATGTTTATGTTTCAAATTC | AATTTTTCAGAAAATGAGAATTCTAAAAAT | ||||
| Mapping_target | Y43H11AL | |||||
| Type_of_mutation | Substitution | a | c | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WGS_Andersen | ||||||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_Andersen | ||||||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_Andersen | ||||||
| WBStrain00027661 | From_analysis | WGS_Andersen | ||||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_Andersen | ||||||
| WBStrain00027669 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | Million_mutation_project_reanalysis | |||||
| WGS_Andersen | ||||||
| DB_info | Database | dbSNP_rs | rs | 193323298 | ||
| dbSNP_ss | ss | 295499216 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00021545 | ||||
| Transcript | Y43H11AL.1a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1a.3:c.1084-1069T>G | |||||
| Intron_number | 7/10 | |||||
| Y43H11AL.1c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1c.1:c.1203-1069T>G | |||||
| Intron_number | 6/8 | |||||
| Y43H11AL.1d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1d.1:c.270-1069T>G | |||||
| Intron_number | 2/4 | |||||
| Y43H11AL.1b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1b.1:c.1245-1069T>G | |||||
| Intron_number | 8/11 | |||||
| Y43H11AL.1a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1a.1:c.1084-1069T>G | |||||
| Intron_number | 7/10 | |||||
| Y43H11AL.1a.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1a.2:c.1084-1069T>G | |||||
| Intron_number | 7/8 | |||||
| Y43H11AL.1a.4 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y43H11AL.1a.4:c.1084-1069T>G | |||||
| Intron_number | 7/9 | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
