WormBase Tree Display for Variation: WBVar01425300
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| WBVar01425300 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01425300 | ||||
| Other_name | cewivar00652008 | |||||
| Y47H9C.4a.1:c.1026+286del | ||||||
| Y47H9C.4b.1:c.1026+286del | ||||||
| Y47H9C.4c.1:c.1026+286del | ||||||
| HGVSg | CHROMOSOME_I:g.11862507del | |||||
| Sequence_details | SMap | S_parent | Sequence | Y47H9C | ||
| Flanking_sequences | GATTGTTCAGTTGTTGGCTAAATTGCTCGATTTTGGACCATTTTTACAGA | TTTTTTTTTTTCGTATTTAACTTGGAAATCGCCAAATTTATATAAAAATC | ||||
| Mapping_target | Y47H9C | |||||
| Type_of_mutation | Deletion | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | ||||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539070053 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00000415 | ||||
| Transcript | Y47H9C.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y47H9C.4a.1:c.1026+286del | |||||
| Intron_number | 6/12 | |||||
| Y47H9C.4c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y47H9C.4c.1:c.1026+286del | |||||
| Intron_number | 6/11 | |||||
| Y47H9C.4b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y47H9C.4b.1:c.1026+286del | |||||
| Intron_number | 6/12 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
