WormBase Tree Display for Variation: WBVar01408137
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| WBVar01408137 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01408137 | ||||
| Other_name | cewivar00659042 | |||||
| Y55D5A.5e.1:c.181-987dup | ||||||
| Y55D5A.5d.1:c.268-987dup | ||||||
| Y55D5A.5a.1:c.409-987dup | ||||||
| Y55D5A.5c.1:c.409-987dup | ||||||
| HGVSg | CHROMOSOME_III:g.3018028_3018029insA | |||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | ||
| Flanking_sequences | GATGTTTACAGATAATTCAAGTGATTTTCTATACTAATTATCAAATGCCG | AAAAAAAAAGTTTAAAATCGGAAATTGACATCGGAATATGCTCATTTCAA | ||||
| Mapping_target | Y55D5A | |||||
| Type_of_mutation | Insertion | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539122644 | ||
| History | Acquires_merge | WBVar01938434 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00000898 | ||||
| Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y55D5A.5e.1:c.181-987dup | |||||
| Intron_number | 2/14 | |||||
| Y55D5A.5a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y55D5A.5a.1:c.409-987dup | |||||
| Intron_number | 5/18 | |||||
| Y55D5A.5c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y55D5A.5c.1:c.409-987dup | |||||
| Intron_number | 6/20 | |||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y55D5A.5d.1:c.268-987dup | |||||
| Intron_number | 3/15 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
