WormBase Tree Display for Variation: WBVar01330407
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| WBVar01330407 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01330407 | |||||
| Other_name | cewivar00512392 | ||||||
| F48E8.1a.1:c.472A>C | |||||||
| CE54061:p.Arg158= | |||||||
| F48E8.1b.1:c.472A>C | |||||||
| F48E8.1c.1:c.472A>C | |||||||
| CE29046:p.Arg158= | |||||||
| CE01953:p.Arg158= | |||||||
| HGVSg | CHROMOSOME_III:g.5476268A>C | ||||||
| Sequence_details | SMap | S_parent | Sequence | F48E8 | |||
| Flanking_sequences | TCCTTGCATCTTCCATAATTACCATCAATCTTTTGTAGGTCCATAATCCA | GATGTGGATGTAACCATGCCTATAAACACTGTTGCGGTCACTATGTTCAG | |||||
| Mapping_target | F48E8 | ||||||
| Type_of_mutation | Substitution | a | C | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539185647 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00003055 | |||||
| Transcript | F48E8.1b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | F48E8.1b.1:c.472A>C | ||||||
| HGVSp | CE29046:p.Arg158= | ||||||
| cDNA_position | 517 | ||||||
| CDS_position | 472 | ||||||
| Protein_position | 158 | ||||||
| Exon_number | 5/8 | ||||||
| Codon_change | Aga/Cga | ||||||
| Amino_acid_change | R | ||||||
| F48E8.1c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F48E8.1c.1:c.472A>C | ||||||
| HGVSp | CE54061:p.Arg158= | ||||||
| cDNA_position | 472 | ||||||
| CDS_position | 472 | ||||||
| Protein_position | 158 | ||||||
| Exon_number | 4/6 | ||||||
| Codon_change | Aga/Cga | ||||||
| Amino_acid_change | R | ||||||
| F48E8.1a.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F48E8.1a.1:c.472A>C | ||||||
| HGVSp | CE01953:p.Arg158= | ||||||
| cDNA_position | 515 | ||||||
| CDS_position | 472 | ||||||
| Protein_position | 158 | ||||||
| Exon_number | 5/8 | ||||||
| Codon_change | Aga/Cga | ||||||
| Amino_acid_change | R | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
