WormBase Tree Display for Variation: WBVar01329499
expand all nodes | collapse all nodes | view schema
WBVar01329499 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01329499 | |||||
Other_name | cewivar00486919 | ||||||
Y55D5A.5a.1:c.161+346T>C | |||||||
Y55D5A.5d.1:c.20+346T>C | |||||||
Y55D5A.5c.1:c.161+346T>C | |||||||
HGVSg | CHROMOSOME_III:g.3022732A>G | ||||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | |||
Flanking_sequences | TGAAGAGAGAAAAAAAACGAAAGGAAAAAATGAGGGAAAAAAAAACGCTA | AATTGAGTTAAAGCTCATTTCCGTGTCAATCTCAACACATAGCTGAAGCA | |||||
Mapping_target | Y55D5A | ||||||
Type_of_mutation | Substitution | a | G | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_De_Bono | |||||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539184829 | |||
Status | Live | ||||||
Affects | Gene | WBGene00000898 | |||||
Transcript | Y55D5A.5a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5a.1:c.161+346T>C | ||||||
Intron_number | 3/18 | ||||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5c.1:c.161+346T>C | ||||||
Intron_number | 4/20 | ||||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5d.1:c.20+346T>C | ||||||
Intron_number | 1/15 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |