WormBase Tree Display for Variation: WBVar01329493
expand all nodes | collapse all nodes | view schema
WBVar01329493 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01329493 | |||||
Other_name | cewivar00486918 | ||||||
Y55D5A.5e.1:c.180+771A>G | |||||||
Y55D5A.5c.1:c.408+771A>G | |||||||
Y55D5A.5d.1:c.267+771A>G | |||||||
Y55D5A.5a.1:c.408+771A>G | |||||||
HGVSg | CHROMOSOME_III:g.3018399T>C | ||||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | |||
Flanking_sequences | CGCCACACCTCGGTTTTTGTGAGAATATCTTAAAAACTACGGAAATTAGG | CAAAAAGTTGAAAAAACGGCCGTCCAACTTCTATAGCACCCCCTCTGATT | |||||
Mapping_target | Y55D5A | ||||||
Type_of_mutation | Substitution | t | C | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_De_Bono | |||||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539184824 | |||
Status | Live | ||||||
Affects | Gene | WBGene00000898 | |||||
Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5e.1:c.180+771A>G | ||||||
Intron_number | 2/14 | ||||||
Y55D5A.5a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5a.1:c.408+771A>G | ||||||
Intron_number | 5/18 | ||||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5c.1:c.408+771A>G | ||||||
Intron_number | 6/20 | ||||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5d.1:c.267+771A>G | ||||||
Intron_number | 3/15 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |