WormBase Tree Display for Variation: WBVar01326449
expand all nodes | collapse all nodes | view schema
WBVar01326449 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01326449 | |||||
Other_name | cewivar00022512 | ||||||
F53A3.4d.3:c.553-290T>C | |||||||
F53A3.4d.1:c.553-290T>C | |||||||
F53A3.4b.1:c.5419-290T>C | |||||||
F53A3.4d.2:c.553-290T>C | |||||||
F53A3.4a.1:c.5314-290T>C | |||||||
HGVSg | CHROMOSOME_III:g.1937391T>C | ||||||
Sequence_details | SMap | S_parent | Sequence | F53A3 | |||
Flanking_sequences | CTTATCAAAAACTTATGAAACCCGTTGGATTAAGTTGAATTTTGCAAATT | CCTACTTTTCTCTCAGTTTTCACTATTTTTCAATGTGATTTTCGAATTCC | |||||
Mapping_target | F53A3 | ||||||
Type_of_mutation | Substitution | t | C | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (72) | |||||||
Laboratory | AX | ||||||
QX | |||||||
Person | WBPerson1730 | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
WGS_Andersen | |||||||
DB_info | Database | dbSNP_ss | ss | 539182085 | |||
History | Acquires_merge | WBVar01444050 | |||||
Status | Live | ||||||
Affects | Gene | WBGene00004128 | |||||
Transcript | F53A3.4d.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53A3.4d.2:c.553-290T>C | ||||||
Intron_number | 8/10 | ||||||
F53A3.4d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53A3.4d.1:c.553-290T>C | ||||||
Intron_number | 9/11 | ||||||
F53A3.4b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53A3.4b.1:c.5419-290T>C | ||||||
Intron_number | 21/23 | ||||||
F53A3.4a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53A3.4a.1:c.5314-290T>C | ||||||
Intron_number | 21/23 | ||||||
F53A3.4d.3 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53A3.4d.3:c.553-290T>C | ||||||
Intron_number | 8/10 | ||||||
Reference | WBPaper00040707 | ||||||
WBPaper00037807 | |||||||
Method | WGS_De_Bono |