WormBase Tree Display for Variation: WBVar01291186
expand all nodes | collapse all nodes | view schema
| WBVar01291186 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01291186 | |||||
| Other_name | cewivar00506321 | ||||||
| Y43H11AL.1a.4:c.965-111C>T | |||||||
| Y43H11AL.1a.3:c.965-111C>T | |||||||
| Y43H11AL.1a.1:c.965-111C>T | |||||||
| Y43H11AL.1c.1:c.923-111C>T | |||||||
| Y43H11AL.1b.1:c.965-111C>T | |||||||
| Y43H11AL.1a.2:c.965-111C>T | |||||||
| HGVSg | CHROMOSOME_II:g.228165G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y43H11AL | |||
| Flanking_sequences | CCGGTTTTCCAAAAAAAAATCGAAAAATTTACGGTTTTACTTTGTTAGAG | ATTTAAATTTTTTTTTCAAACTTCCGCACTGCAACTTTTTCCTCACGAGG | |||||
| Mapping_target | Y43H11AL | ||||||
| Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539150347 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00021545 | |||||
| Transcript | Y43H11AL.1a.3 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1a.3:c.965-111C>T | ||||||
| Intron_number | 6/10 | ||||||
| Y43H11AL.1c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1c.1:c.923-111C>T | ||||||
| Intron_number | 4/8 | ||||||
| Y43H11AL.1b.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1b.1:c.965-111C>T | ||||||
| Intron_number | 6/11 | ||||||
| Y43H11AL.1a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1a.1:c.965-111C>T | ||||||
| Intron_number | 6/10 | ||||||
| Y43H11AL.1a.2 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1a.2:c.965-111C>T | ||||||
| Intron_number | 6/8 | ||||||
| Y43H11AL.1a.4 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y43H11AL.1a.4:c.965-111C>T | ||||||
| Intron_number | 6/9 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
