WormBase Tree Display for Variation: WBVar01281503
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| WBVar01281503 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01281503 | |||||
| Other_name | cewivar00505307 | ||||||
| E01A2.2b.3:c.993C>T | |||||||
| E01A2.2a.1:c.1542C>T | |||||||
| E01A2.2b.4:c.993C>T | |||||||
| E01A2.2b.2:c.993C>T | |||||||
| CE20643:p.Leu514= | |||||||
| CE33369:p.Leu331= | |||||||
| E01A2.2b.1:c.993C>T | |||||||
| HGVSg | CHROMOSOME_I:g.4134362C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | E01A2 | |||
| Flanking_sequences | GGGCAGCCGCCTTCTGGAGTATCAATCACTACTGACGAGGATGGAGCTCT | GTCGTTCCACAGAAATTTGTGAACGATTTTATTTCGGGATTCAATAGCCG | |||||
| Mapping_target | E01A2 | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539141633 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00017085 | |||||
| Transcript | E01A2.2b.3 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | E01A2.2b.3:c.993C>T | ||||||
| HGVSp | CE33369:p.Leu331= | ||||||
| cDNA_position | 1590 | ||||||
| CDS_position | 993 | ||||||
| Protein_position | 331 | ||||||
| Exon_number | 5/8 | ||||||
| Codon_change | ctC/ctT | ||||||
| Amino_acid_change | L | ||||||
| E01A2.2b.2 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | E01A2.2b.2:c.993C>T | ||||||
| HGVSp | CE33369:p.Leu331= | ||||||
| cDNA_position | 1846 | ||||||
| CDS_position | 993 | ||||||
| Protein_position | 331 | ||||||
| Exon_number | 5/8 | ||||||
| Codon_change | ctC/ctT | ||||||
| Amino_acid_change | L | ||||||
| E01A2.2b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | E01A2.2b.1:c.993C>T | ||||||
| HGVSp | CE33369:p.Leu331= | ||||||
| cDNA_position | 1150 | ||||||
| CDS_position | 993 | ||||||
| Protein_position | 331 | ||||||
| Exon_number | 3/6 | ||||||
| Codon_change | ctC/ctT | ||||||
| Amino_acid_change | L | ||||||
| E01A2.2a.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | E01A2.2a.1:c.1542C>T | ||||||
| HGVSp | CE20643:p.Leu514= | ||||||
| cDNA_position | 1543 | ||||||
| CDS_position | 1542 | ||||||
| Protein_position | 514 | ||||||
| Exon_number | 6/9 | ||||||
| Codon_change | ctC/ctT | ||||||
| Amino_acid_change | L | ||||||
| E01A2.2b.4 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | E01A2.2b.4:c.993C>T | ||||||
| HGVSp | CE33369:p.Leu331= | ||||||
| cDNA_position | 1681 | ||||||
| CDS_position | 993 | ||||||
| Protein_position | 331 | ||||||
| Exon_number | 3/6 | ||||||
| Codon_change | ctC/ctT | ||||||
| Amino_acid_change | L | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
