WormBase Tree Display for Variation: WBVar01280845
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WBVar01280845 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01280845 | |||||
Other_name | cewivar00504838 | ||||||
F21A9.1a.2:c.-486-36T>A | |||||||
F21A9.1a.1:c.-522T>A | |||||||
F21A9.1b.1:c.52-36T>A | |||||||
HGVSg | CHROMOSOME_I:g.3711216T>A | ||||||
Sequence_details | SMap | S_parent | Sequence | F21A9 | |||
Flanking_sequences | CCAAGAGCATTTTTTATTCCTCATAATCAGAAAGACACTTTGAATTTTTT | AAAAATGAACTCCAAAAAATATAGAAACCTTCCAGGAATCAGCACTAGAA | |||||
Mapping_target | F21A9 | ||||||
Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_De_Bono | |||||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539141040 | |||
Status | Live | ||||||
Affects | Gene | WBGene00017650 | |||||
Transcript | F21A9.1a.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | F21A9.1a.2:c.-486-36T>A | ||||||
Intron_number | 1/7 | ||||||
F21A9.1a.1 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F21A9.1a.1:c.-522T>A | ||||||
cDNA_position | 1127 | ||||||
Exon_number | 1/7 | ||||||
F21A9.1b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F21A9.1b.1:c.52-36T>A | ||||||
Intron_number | 1/5 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |