WormBase Tree Display for Variation: WBVar01279207
expand all nodes | collapse all nodes | view schema
| WBVar01279207 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01279207 | |||||
| Other_name | cewivar00504445 | ||||||
| CE49736:p.His1888= | |||||||
| F12B6.1b.1:c.5664C>T | |||||||
| CE40156:p.His1925= | |||||||
| F12B6.1a.1:c.5775C>T | |||||||
| HGVSg | CHROMOSOME_I:g.2257541G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | F12B6 | |||
| Flanking_sequences | CGATTTCCACCGGAGAGGCTTGACGTCTGGGTGTTTGCGTAGGGACGGAG | TGGAGAGCAATCAGCAGACGATCGATTATCTGGAAATTTGTTTTTTTATT | |||||
| Mapping_target | F12B6 | ||||||
| Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539139566 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00000020 | |||||
| Transcript | F12B6.1a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | F12B6.1a.1:c.5775C>T | ||||||
| HGVSp | CE40156:p.His1925= | ||||||
| cDNA_position | 5775 | ||||||
| CDS_position | 5775 | ||||||
| Protein_position | 1925 | ||||||
| Exon_number | 32/34 | ||||||
| Codon_change | caC/caT | ||||||
| Amino_acid_change | H | ||||||
| F12B6.1b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F12B6.1b.1:c.5664C>T | ||||||
| HGVSp | CE49736:p.His1888= | ||||||
| cDNA_position | 5664 | ||||||
| CDS_position | 5664 | ||||||
| Protein_position | 1888 | ||||||
| Exon_number | 32/33 | ||||||
| Codon_change | caC/caT | ||||||
| Amino_acid_change | H | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
