WormBase Tree Display for Variation: WBVar01277954

WBVar01277954 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar01277954
    Other_name: cewivar00133627
      CE49571:p.Ser112=
      Y71G12B.11e.1:c.2367T>A
      Y71G12B.11d.1:c.336T>A
      CE50474:p.Ser789=
      Y71G12B.11c.1:c.1473T>A
      CE29914:p.Ser1154=
      Y71G12B.11b.1:c.*767T>A
      CE46470:p.Ser491=
      Y71G12B.11a.1:c.3462T>A
    HGVSg: CHROMOSOME_I:g.1734927T>A
  Sequence_details: SMap: S_parent: Sequence: Y71G12B
    Flanking_sequences: CTCATCACTGCTGCTGCCACGTCTAATGACGACAAATACGTCGGAACGTC GCTGTGGAACTTGCTCAAGGACTCAGAGACTTTACGGATGCTATCACTGA
    Mapping_target: Y71G12B
    Type_of_mutation: Substitution: t A Paper_evidence: WBPaper00037807
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022850 From_analysis: Million_mutation_project_reanalysis
          WGS_De_Bono
      WBStrain00022886 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022930 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023018 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023286 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: WGS_De_Bono
      Million_mutation_project_reanalysis
    DB_info: Database: dbSNP_ss ss 539138438
    Status: Live
  Affects: Gene: WBGene00006771
    Transcript: Y71G12B.11c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71G12B.11c.1:c.1473T>A
        HGVSp: CE46470:p.Ser491=
        cDNA_position: 1541
        CDS_position: 1473
        Protein_position: 491
        Exon_number: 5/7
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71G12B.11e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71G12B.11e.1:c.2367T>A
        HGVSp: CE50474:p.Ser789=
        cDNA_position: 2367
        CDS_position: 2367
        Protein_position: 789
        Exon_number: 5/7
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71G12B.11a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71G12B.11a.1:c.3462T>A
        HGVSp: CE29914:p.Ser1154=
        cDNA_position: 3467
        CDS_position: 3462
        Protein_position: 1154
        Exon_number: 9/12
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71G12B.11d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71G12B.11d.1:c.336T>A
        HGVSp: CE49571:p.Ser112=
        cDNA_position: 620
        CDS_position: 336
        Protein_position: 112
        Exon_number: 3/6
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71G12B.11b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: Y71G12B.11b.1:c.*767T>A
        cDNA_position: 3765
        Exon_number: 11/13
  Reference: WBPaper00037807
  Method: WGS_De_Bono