WormBase Tree Display for Variation: WBVar01274816
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WBVar01274816 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01274816 | |||||
Other_name | cewivar00388577 | ||||||
CE40083:p.Ser19= | |||||||
H23N18.5.1:c.57A>T | |||||||
HGVSg | CHROMOSOME_V:g.4912324T>A | ||||||
Sequence_details | SMap | S_parent | Sequence | H23N18 | |||
Flanking_sequences | AGCTCCGCAAATCCAGACTGAATTGGATCGTGTCCGCATGAAAAACGAGC | GACACCATAGTTATAGCACATAGGGAGACAAGAATTGCCAAAAGTGAGCT | |||||
Mapping_target | H23N18 | ||||||
Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539109279 | |||
Status | Live | ||||||
Affects | Gene | WBGene00019236 | |||||
Transcript | H23N18.5.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | ||||||
HGVSc | H23N18.5.1:c.57A>T | ||||||
HGVSp | CE40083:p.Ser19= | ||||||
cDNA_position | 58 | ||||||
CDS_position | 57 | ||||||
Protein_position | 19 | ||||||
Exon_number | 2/5 | ||||||
Codon_change | tcA/tcT | ||||||
Amino_acid_change | S | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |